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fmralign
fmralign
  • Quickstart
  • Examples
    • Template-based prediction.
    • Decoupling template generation and alignment
    • Pairwise functional alignment.
    • Pairwise functional alignment on a ROI.
    • Alignment methods benchmark (template-based ROI case)
    • Pairwise surface alignment.
    • Alignment on simulated 2D data.
  • User guide
    • 1. Introduction: fmralign in a nutshell
    • 2. Functional alignment: handling functional variability
      • 2.1. An introduction to functional alignment
      • 2.2. Functional alignment pipeline
  • API References
    • fmralign.alignment: Alignment Strategies
      • fmralign.alignment.pairwise_alignment.PairwiseAlignment
      • fmralign.alignment.group_alignment.GroupAlignment
    • fmralign.methods: Alignment Methods
      • fmralign.methods.Identity
      • fmralign.methods.DetSRM
      • fmralign.methods.Procrustes
      • fmralign.methods.RidgeAlignment
      • fmralign.methods.OptimalTransport
    • fmralign.embeddings: Embedding Utilities
      • fmralign.embeddings.connectivity.get_connectivity_features
      • fmralign.embeddings.parcellation.get_adjacency_from_labels
      • fmralign.embeddings.parcellation.get_labels
      • fmralign.embeddings.whole_brain.get_adjacency_from_mask

Development

  • People
  • Citing Nilearn and scikit-learn
  • What’s new
  • GitHub Repository
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fmralign.alignment: Alignment Strategies¶

Alignment strategies for two or more subjects.

fmralign.alignment.pairwise_alignment: Pairwise Alignment¶

Classes¶

PairwiseAlignment([method, labels, n_jobs, ...])

Performs pairwise alignment between two subjects.

fmralign.alignment.group_alignment: Group Alignment¶

Classes¶

GroupAlignment([method, labels, n_jobs, ...])

Performs group-level alignment of various subject data.
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fmralign.alignment.pairwise_alignment.PairwiseAlignment
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API References
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  • fmralign.alignment: Alignment Strategies
    • fmralign.alignment.pairwise_alignment: Pairwise Alignment
      • Classes
    • fmralign.alignment.group_alignment: Group Alignment
      • Classes